1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcgcatttcttagttaattcatgctcctgatgtgttttattcttctctaattctgtttctcatggctgcattcactcacaatgttgctttaatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTCTGAATGGCAGCCGCGGAGGTATCGGAGCTACCCCCTCTCGAAGAATTG
species | Physcomitrella patens |
transcript | PP1S186_65V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|100446819|gb|CJ971118.1|CJ971118
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|100389724|gb|BY952530.1|BY952530
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18367834|gb|BJ199917.1|BJ199917
genomic: ATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18345260|gb|BJ177302.1|BJ177302
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18366467|gb|BJ198546.1|BJ198546
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18362406|gb|BJ194476.1|BJ194476
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: CTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18368657|gb|BJ200742.1|BJ200742
genomic: CTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18326970|gb|BJ158971.1|BJ158971
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: GCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18362113|gb|BJ194181.1|BJ194181
genomic: GCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|208385579|gb|DC937124.1|DC937124
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18360390|gb|BJ192452.1|BJ192452
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18374229|gb|BJ205807.1|BJ205807
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18372230|gb|BJ203832.1|BJ203832
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18371374|gb|BJ202976.1|BJ202976
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: CTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18366521|gb|BJ198600.1|BJ198600
genomic: CTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18353706|gb|BJ185761.1|BJ185761
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: TAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18347912|gb|BJ179959.1|BJ179959
genomic: TAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTNATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18372929|gb|BJ204531.1|BJ204531
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTEST: gi|18372218|gb|BJ203820.1|BJ203820
genomic: ATGATGGTGATACTGCTCCTATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
EST: ATCATAAAGCTGATCACCGCAGTCTCACTG GTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
genomic: ATCATAAAGCTGATCACCGCAGTCTCACTGgttcgtatcc ... taatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTT
ctctaattctgtttctcatggctgcattcactcacaatgttgctttaatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTCTGAATGGCAGCCGCGGAGGTATCGGAGCTACCCCCTCTCGAAGAATTG
ttgcttt CT-rich tract
tttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgcatttcttagttaattcatgctcctgatgtgttttattcttctctaattctgtttctcatggctgcattcactcacaatgttgctttaatggatagGTGCGGGTATATCTTATATCAAGGCTTCTTCTACTGCTTTCAAGGCTTCTTCTGAATGGCAGCCGCGGAGGTATCGGAGCTACCCCCTCTCGAAGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA