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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttgtaggggtattatgtcgtgcacttgaagtgggatgcgtgttatctctacggctgttattgtggttttgatggctacgattatgcttgtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG

Basic information

species Physcomitrella patens
transcript PP1S184_111V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
agttgtaggggtattatgtcgtgcacttgaagtgggatgcgtgttatctctacggctgttattgtggttttgatggctacgattatgcttgtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG
    |||  | || |   |  ||   ||||  | |  |||    |   | |  ||   |||   ||       ||  |  |||||||   || |   ||||||||||||||||||||||||||  |||| || || || |   || |||||   || |||   |||||||||||  | ||||| || || || || || |
gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatg-------tgaatgtgattatg---gttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA13G28830.1 (Glycine max), 3'ss of exon 1
agttgtaggggtattatgtcgtgcacttgaagtgggatgcgtgttatctctacggctgttattgtggttttgatggctacgattatgcttgtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG
   ||     |  | | | | | |   ||   | |  | | | ||   || |      || ||  |     | | |      || ||  |||| |  ||||||||||||||||||||||| ||  |||| |||||||| |   |  || ||   || |||   ||||| |||||| | ||||| || || || || ||||
--gtgcgtaagattcacgccattc---tgtgtttgatttcatcttccttcgattatgatttttacga----ggtagtatgtgttttg--tgtctttgcagTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAGCATCCGAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67697394|gb|BJ957627.1|BJ957627
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162266001|gb|FC443394.1|FC443394
EST:     ACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: ACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162208118|gb|FC384573.1|FC384573
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|19790852|gb|BQ042089.1|BQ042089
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162273888|gb|FC450027.1|FC450027
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67703295|gb|BJ963528.1|BJ963528
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162267613|gb|FC443395.1|FC443395
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162217376|gb|FC392844.1|FC392844
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162261334|gb|FC437767.1|FC437767
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|18328473|gb|BJ160478.1|BJ160478
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162252640|gb|FC428671.1|FC428671
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162262546|gb|FC439745.1|FC439745
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67728138|gb|BJ978397.1|BJ978397
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67700094|gb|BJ960327.1|BJ960327
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67576562|gb|BJ949386.1|BJ949386
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162238901|gb|FC415091.1|FC415091
EST:     CGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162208119|gb|FC384574.1|FC384574
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|6102500|gb|AW126970.1|AW126970
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162245564|gb|FC423286.1|FC423286
EST:     ATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: ATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162269520|gb|FC445076.1|FC445076
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|208354954|gb|DC914218.1|DC914218
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGACCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162245565|gb|FC423287.1|FC423287
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67574005|gb|BJ946829.1|BJ946829
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|18336702|gb|BJ168725.1|BJ168725
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162265925|gb|FC442928.1|FC442928
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67720373|gb|BJ970632.1|BJ970632
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|37848514|gb|BJ606522.1|BJ606522
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67702479|gb|BJ962712.1|BJ962712
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|18367954|gb|BJ200038.1|BJ200038
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67724821|gb|BJ975080.1|BJ975080
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCGCCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67719874|gb|BJ970133.1|BJ970133
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162207337|gb|FC383894.1|FC383894
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162207338|gb|FC383895.1|FC383895
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67716306|gb|BJ966566.1|BJ966566
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCGCCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|18372400|gb|BJ204002.1|BJ204002
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|67701885|gb|BJ962118.1|BJ962118
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|162262545|gb|FC439744.1|FC439744
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|37821368|gb|BJ579434.1|BJ579434
EST:     NTCCCCGTACAAGTCCCGGTTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|208382431|gb|DC927965.1|DC927965
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGACCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
EST: gi|100360736|gb|BY965874.1|BY965874
EST:     CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGG                         TTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG
genomic: CTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 73

CCTCTTTCACTTCCTTCGGTGCTGGAATTGGGCCCTCCCCGTACAAGTCCCGGCTACTCCGATCACGCGACCATGAGCTTCCGGgttcgtcatg ... gtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctacggctgttattgtggttttgatggctacgattatgcttgtcgtgacagTTTCACCAGTACCAGGTGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCG
                      ttttgat  putative branch site (score: 73)
           tgttatt  TA-rich tract