1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caattgtttttttttgagtaattaaaattcgctaataaatccattcttgttacaggatgtggtggtaagtaagtagtttacttttgttttgtgtccacagGGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAACGCAAGACACAGTGAAGAAGTTGCAAACTATTTATGGCGAAGACAAGATT
species | Physcomitrella patens |
transcript | PP1S182_58V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCCTCAACATCGCGCTCATCTGCTACCTCCTTTTCAAACACTTGAA GGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAACEST: gi|100376044|gb|BY968281.1|BY968281
genomic: GAGTGCCTCAACATCGCGCTCATCTGCTACCTCCTTTTCAAACACTTGAAgtgagtattt ... gtgtccacagGGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAAC
EST: GAGTGCCTCAACATCGCGCTCATCTGCTACCTCCTTTTCAAACACTTGAA GGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAAC
genomic: GAGTGCCTCAACATCGCGCTCATCTGCTACCTCCTTTTCAAACACTTGAAgtgagtattt ... gtgtccacagGGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAAC
cttgttacaggatgtggtggtaagtaagtagtttacttttgttttgtgtccacagGGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAACGCAAGACACAGTGAAGAAGTTGCAAACTATTTATGGCGAAGACAAGATT
tttacttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattgtttttttttgagtaattaaaattcgctaataaatccattcttgttacaggatgtggtggtaagtaagtagtttacttttgttttgtgtccacagGGATTACAATTTTGAAATTATTATTGTTGACGACGCAAGCCCAGACGGAACGCAAGACACAGTGAAGAAGTTGCAAACTATTTATGGCGAAGACAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA