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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctagttctcagattttagaaatagaacaacgttgtataatgttttgcacttggtttagaggctgccctctaaccgcaacgcactgtattcatggcagGCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTGCGTAATGTTCCTGATAAATTTAAGGACCTCGATGAATATCTAGAGGTTT

Basic information

species Physcomitrella patens
transcript PP1S180_118V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18367159|gb|BJ199240.1|BJ199240
EST:     AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAG                         GCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG
genomic: AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAGgtaagaattt ... ttcatggcagGCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG
EST: gi|18371873|gb|BJ203475.1|BJ203475
EST:     AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAG                         GCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG
genomic: AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAGgtaagaattt ... ttcatggcagGCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG
EST: gi|18368734|gb|BJ200819.1|BJ200819
EST:     AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAG                         GCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG
genomic: AGAAATCCGTCCTCGCTTGGGATTATATTCGCATCGTCACAGAAGATAAGgtaagaattt ... ttcatggcagGCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcacttggtttagaggctgccctctaaccgcaacgcactgtattcatggcagGCCAACCAGAAGAAGAGGAAGGCATCAGATTTAGCTAAAGGGTCTGCACTGCGTAATGTTCCTGATAAATTTAAGGACCTCGATGAATATCTAGAGGTTT
                        ctctaac  putative branch site (score: 2)
                                           tattcat  TA-rich tract