1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagggctacgctctatttgattctgagtaggacttgagttttagccgtttgggattgtcgacgtgcagcacagaaggtgcagatgtgagatgttgttatagatgaactaagacgtagctttctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGAGAAATATATGATAAATATGGAGAAGACGCTCTTAAAGAGGGAGCTGGTT
species | Physcomitrella patens |
transcript | PP1S174_97V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAG TTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGAEST: gi|100388244|gb|BY951846.1|BY951846
genomic: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAGgtagggctac ... ctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGA
EST: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAG TTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGAEST: gi|100370427|gb|BY985404.1|BY985404
genomic: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAGgtagggctac ... ctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGA
EST: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAG TTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGA
genomic: GGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAGgtagggctac ... ctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGA
gtgcagatgtgagatgttgttatagatgaactaagacgtagctttctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGAGAAATATATGATAAATATGGAGAAGACGCTCTTAAAGAGGGAGCTGGTT
ctttctctctgc CT-rich tract
ttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggctacgctctatttgattctgagtaggacttgagttttagccgtttgggattgtcgacgtgcagcacagaaggtgcagatgtgagatgttgttatagatgaactaagacgtagctttctctctgcagTTCAAGGAACTTGCTCATGCATTCCAAATACTTAGTGATCCCAAGAAACGAGAAATATATGATAAATATGGAGAAGACGCTCTTAAAGAGGGAGCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT