1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgttggtgtttggatgggcgttgctctgtagtttgtcagtgagccacgtgcggaatgcttaatattttgaagttggcacttcaaggagatcgtgctttgtggagtcggtgttctcgtttgtaaatatcatatatacctgcttacttgagtgatctttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAGAACTGTATGATCAGTATGGAGAAGACGCTCTCAAGGAAGGAATGGGTG
species | Physcomitrella patens |
transcript | PP1S174_37V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100402414|gb|BY954824.1|BY954824
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162153711|gb|FC329114.1|FC329114
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18325240|gb|BJ157236.1|BJ157236
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162152004|gb|FC327918.1|FC327918
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162197042|gb|FC375241.1|FC375241
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162180092|gb|FC356657.1|FC356657
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|208373708|gb|DC936535.1|DC936535
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|67574368|gb|BJ947192.1|BJ947192
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18346826|gb|BJ178871.1|BJ178871
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACEST: gi|208358355|gb|DC934548.1|DC934548
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGAC
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162213966|gb|FC390165.1|FC390165
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18348556|gb|BJ180605.1|BJ180605
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCGATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGGCCCCGAGAAGCGAEST: gi|162151466|gb|FC326971.1|FC326971
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100384387|gb|BY969518.1|BY969518
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100407617|gb|BY991778.1|BY991778
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|208353142|gb|DC910151.1|DC910151
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18343570|gb|BJ175608.1|BJ175608
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|208359865|gb|DC934866.1|DC934866
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100441954|gb|BY981177.1|BY981177
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18365920|gb|BJ197998.1|BJ197998
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCEST: gi|162263312|gb|FC439094.1|FC439094
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACC
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18332502|gb|BJ164515.1|BJ164515
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|162166513|gb|FC343210.1|FC343210
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAGAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100392962|gb|BY989694.1|BY989694
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|67569005|gb|BJ941829.1|BJ941829
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|18343937|gb|BJ175976.1|BJ175976
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAEST: gi|100396849|gb|BY953858.1|BY953858
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
EST: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAG TTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
genomic: GGAAGGCGGCAATTAAAAACCATCCGGATAAGGGTGGTGACCCTGAGAAGgtacgttggt ... tttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGA
gttctcgtttgtaaatatcatatatacctgcttacttgagtgatctttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAGAACTGTATGATCAGTATGGAGAAGACGCTCTCAAGGAAGGAATGGGTG
tgcttac putative branch site (score: 50)
tctttttcgc putative PPT
tttgtaaatatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttggtgtttggatgggcgttgctctgtagtttgtcagtgagccacgtgcggaatgcttaatattttgaagttggcacttcaaggagatcgtgctttgtggagtcggtgttctcgtttgtaaatatcatatatacctgcttacttgagtgatctttttcgcagTTCAAAGAGATTTCACAAGCGTACGAAGTTTTAAGCGACCCCGAGAAGCGAGAACTGTATGATCAGTATGGAGAAGACGCTCTCAAGGAAGGAATGGGTG
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