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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattttgtcagttagtagcttactttttgcatatgagcacaggtgatcgtgcaagtgtacagtgttttctgacaagttctgggtggtcatctcctgcagTTCAGTGTATCTCAAGTCTAAAAAGACGATATTGTAACCAGCACAATGAGCAGCCGTGCCAGCCGAACGATTTATGTCGGAAACCTTCCCGGTGATGTGA

Basic information

species Physcomitrella patens
transcript PP1S173_12V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67574652|gb|BJ947476.1|BJ947476
EST:     TTGCTGTCGCTGGCGACCGATTGCATTCCGTCTTTGTGTTCCATGTACTG                         TTCAGTGTATCTCAAGTCTAAAAAGACGATATTGTAACCAGCACAATGAGC
genomic: TTGCTGTCGCTGGCGACCGATTGCATTCCGTCTTTGTGTTCCATGTACTGgtaatttctg ... tctcctgcagTTCAGTGTATCTCAAGTCTAAAAAGACGATATTGTAACCAGCACAATGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcgtgcaagtgtacagtgttttctgacaagttctgggtggtcatctcctgcagTTCAGTGTATCTCAAGTCTAAAAAGACGATATTGTAACCAGCACAATGAGCAGCCGTGCCAGCCGAACGATTTATGTCGGAAACCTTCCCGGTGATGTGA
                      ttctgac  putative branch site (score: 2)
                                          tcatctcct  putative PPT