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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcgttttcttttttttttctttttttttttcttttttttttctttttttttttttttttggaaagttgagagtaagaggaaatttctgcctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAGGGGATTCACTCAGCGTCCCCATCCATTCGTCAATCTGGCGCAGAAGATC

Basic information

species Physcomitrella patens
transcript PP1S165_119V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100439869|gb|BY980280.1|BY980280
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|18359536|gb|BJ191597.1|BJ191597
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|208360006|gb|DC939310.1|DC939310
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|18351813|gb|BJ183865.1|BJ183865
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|18373505|gb|BJ205083.1|BJ205083
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100447198|gb|CJ971497.1|CJ971497
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|67709495|gb|BJ965311.1|BJ965311
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100397857|gb|BY990436.1|BY990436
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100422751|gb|BY957982.1|BY957982
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100386905|gb|BY988174.1|BY988174
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100401634|gb|BY954629.1|BY954629
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100436225|gb|BY979442.1|BY979442
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100360406|gb|BY984111.1|BY984111
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|18367245|gb|BJ199326.1|BJ199326
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100422530|gb|BY976419.1|BY976419
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|100390752|gb|BY971507.1|BY971507
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
EST: gi|67574586|gb|BJ947410.1|BJ947410
EST:     GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGG                         GGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG
genomic: GCTCCTCTTTCATATGATCCTCGAAGTTCTCGGTTTAGTCTTCTACGCGGgtaagctgat ... cctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttttttttttggaaagttgagagtaagaggaaatttctgcctggtttagGGGGCTTGAGGGAGGAAGGTCGGGGGAAGAGACGCTTGAGGCTGCTGAAAGGGGATTCACTCAGCGTCCCCATCCATTCGTCAATCTGGCGCAGAAGATC
                                       tttctgcct  CT-rich tract
     tttttttttttggaaa  TA-rich tract