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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacacgtgatttttcatccgaacagaattatatgtgtgtgaatctctggttgaaattgtactggcacgcttgctgtgccctaagaatcgtgttattccatgctgcagCGATCAAGATGACTATGAAGTAGTTCGGAAGATGGGGCGTGGTAAATACAGCGAGGTATTCGAAGGTATCAACACTGTTAACAATGAGCGTTGCGTTATC

Basic information

species Physcomitrella patens
transcript PP1S165_107V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133106|gb|BQ827548.1|BQ827548
EST:     CAGCGTCCAAAAGACTATTGGGATTACGAAGCTCTTACAATTCAATGGGG                         CGATCAAGATGACTATGAAGTAGTTCGGAAGATGGGGCGTGGTAAATACAG
genomic: CAGCGTCCAAAAGACTATTGGGATTACGAAGCTCTTACAATTCAATGGGGgtatggacac ... catgctgcagCGATCAAGATGACTATGAAGTAGTTCGGAAGATGGGGCGTGGTAAATACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgtactggcacgcttgctgtgccctaagaatcgtgttattccatgctgcagCGATCAAGATGACTATGAAGTAGTTCGGAAGATGGGGCGTGGTAAATACAGCGAGGTATTCGAAGGTATCAACACTGTTAACAATGAGCGTTGCGTTATC
                                       ttattcc  CT-rich tract
 taagaat  TA-rich tract