1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcttcttgcgacctaacaatgcttcataaatttgtgaaagagtggagaatgtgtgccctttgtgtatttgtggatttttgatctcttcttcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGGGTCGCAACGTCGTGCTTGAGAGCAAGTACGGGTCTCCTAAGATTGTGA
species | Physcomitrella patens |
transcript | PP1S15_485V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|67575198|gb|BJ948022.1|BJ948022
genomic: GCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162153515|gb|FC329609.1|FC329609
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: TATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|208364523|gb|DC930913.1|DC930913
genomic: TATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162155281|gb|FC331218.1|FC331218
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|67507453|gb|BJ940335.1|BJ940335
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162171512|gb|FC347814.1|FC347814
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|18361532|gb|BJ193598.1|BJ193598
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162256596|gb|FC432906.1|FC432906
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|100409963|gb|BY974341.1|BY974341
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|67574539|gb|BJ947363.1|BJ947363
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|18341885|gb|BJ173920.1|BJ173920
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|67704538|gb|BJ964771.1|BJ964771
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162255427|gb|FC431841.1|FC431841
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGEST: gi|162154271|gb|FC330402.1|FC330402
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
EST: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAG GCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
genomic: CGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctg ... tcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAG
gagaatgtgtgccctttgtgtatttgtggatttttgatctcttcttcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGGGTCGCAACGTCGTGCTTGAGAGCAAGTACGGGTCTCCTAAGATTGTGA
ttttgat putative branch site (score: 4)
tttttgatctcttctt CT-rich tract
atttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcttgcgacctaacaatgcttcataaatttgtgaaagagtggagaatgtgtgccctttgtgtatttgtggatttttgatctcttcttcttgaacagGCTGGAGTTGATAAGCTCGCGGATCTTGTGGGTGTCACCTTGGGCCCTAAGGGTCGCAACGTCGTGCTTGAGAGCAAGTACGGGTCTCCTAAGATTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG