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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgtcttagcctcagttaattcaaacgcatcccatctccgcttctgtgatgtgattaataaatgctgacgaattcgtcacttcgctaaccttcttgttagGGTTCAGGCTACATCGGTGAGCTAGTAGATGAACACAGAGCCGGCAGAATTGTTGTTGAGTTGAACGGCAGGCTCAACAAGTGCGATGTGATCAGTCCTC

Basic information

species Physcomitrella patens
transcript PP1S15_386V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_386V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
acgtcttagcctcagttaa-ttcaaacgcatcccatctccg-cttctgtgatgtgattaataaatgctgacgaattcgtcacttcgctaaccttcttgttagGGTTCAGGCTACATCGGTGAGC--TAGTA----GATGAACACAGAGCCGGCAGAATTGTTGTTGAGTTGAACGGCAGGCTCAACAAGTGCGATGTGATCAGTCCTC-
           | |||||  || |    |||    | | |  ||| |  || |  |  ||  | | ||  | | |        |||  ||  ||    ||    | |||| || ||| |||||   |||||    || || || ||||| || || || || |||||||||||||||||||| |||||||| |   |||||||||||| 
----------gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttct--caattctcatgagtcgtgaatgttgccctttc--tacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgtgattaataaatgctgacgaattcgtcacttcgctaaccttcttgttagGGTTCAGGCTACATCGGTGAGCTAGTAGATGAACACAGAGCCGGCAGAATTGTTGTTGAGTTGAACGGCAGGCTCAACAAGTGCGATGTGATCAGTCCTC
                                     cgctaac  putative branch site (score: 2)
                                           ccttcttgtt  CT-rich tract
      tgattaataaat  TA-rich tract