1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agtgcgaaaattgcagccgtgacagttcctcgtcaacgtcgttttcttgccctaattatggcgagaatttcaatatagtgaaggtggtgttgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAGCTCCGCTGAAGCGCAAGGGTCTGGATATTCTTACAT
species | Physcomitrella patens |
transcript | PP1S159_2V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|67577820|gb|BJ949987.1|BJ949987
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|18355976|gb|BJ188035.1|BJ188035
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|100429656|gb|BY959672.1|BY959672
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|67570133|gb|BJ942957.1|BJ942957
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|67719502|gb|BJ969761.1|BJ969761
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|208399592|gb|DC908773.1|DC908773
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: NGTTTCGAANTCGAANAGTGTTGTGGTAGCTGCTCGGAANTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCNAATGAGTACATTGAAAEST: gi|18349178|gb|BJ181227.1|BJ181227
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GTTTCGAAGTCGAAGAGTGTTGTGGTAGCCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|208363831|gb|DC943288.1|DC943288
genomic: GTTTCGAAGTCGAAGAGTGTTGTGGTAGC-TGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|162164027|gb|FC339926.1|FC339926
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAEST: gi|100412669|gb|BY974849.1|BY974849
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
EST: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAG AGCAACGGGAGACTGTTGTAAGCAAAGACGACTCGGATGAGTACATTGGAA
genomic: GGTTTCGAAGTCGAAGAGTGTTGTGGTAGCTGCTCGGAAGTCTACTCAAGgtctgtgaga ... tgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAA
cttgccctaattatggcgagaatttcaatatagtgaaggtggtgttgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAGCTCCGCTGAAGCGCAAGGGTCTGGATATTCTTACAT
ccctaat putative branch site (score: 14)
agaatttcaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgcgaaaattgcagccgtgacagttcctcgtcaacgtcgttttcttgccctaattatggcgagaatttcaatatagtgaaggtggtgttgaatgacagAGCAACGGGAGACTGTTGTAAGCAAGGACGACTCGAATGAGTACATTGAAAGCTCCGCTGAAGCGCAAGGGTCTGGATATTCTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC