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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcgtatggaagtataaattaaggttcaaattcaggggtgtatacgttggcagttggattcggacgaattgtatgagttgtttgtctttgcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGGAATCTGCAACCATAGCCACAACCACAATCTTCCTAGCCGGTGCCCCAGT

Basic information

species Physcomitrella patens
transcript PP1S158_146V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100425105|gb|BY976975.1|BY976975
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|67572126|gb|BJ944950.1|BJ944950
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|208360410|gb|DC930791.1|DC930791
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAANCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAGCATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|208366843|gb|DC940157.1|DC940157
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAANCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|100372845|gb|BY948729.1|BY948729
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|208367100|gb|DC935928.1|DC935928
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAAACTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|100377948|gb|BY949603.1|BY949603
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|67570839|gb|BJ943663.1|BJ943663
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|67569869|gb|BJ942693.1|BJ942693
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
EST: gi|100445814|gb|CJ970113.1|CJ970113
EST:     TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAANCTGTGGCTG                         GTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG
genomic: TTCATCGGGGGTTGTGAATGCCGAGCTCGGATCTCCCCAATCTGTGGCTGgtgagcagat ... gcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttggcagttggattcggacgaattgtatgagttgtttgtctttgcggtggcagGTATCGTGAATACTGTGAAGTTGGCTTTAACATCGTCACCACCAAGCTGGGAATCTGCAACCATAGCCACAACCACAATCTTCCTAGCCGGTGCCCCAGT
                                        tctttgc  CT-rich tract
                      aattgtat  TA-rich tract