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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggtttgacggcgatttgggttgtccaagagggttggaagcattttttttttttcttttcaattttaaagttgcggttttgctttcaatttctagacgggtgtttgtgggtcttgaattgggtttttgagctggtgtttatttgggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG

Basic information

species Physcomitrella patens
transcript PP1S154_6V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360118|gb|BJ192180.1|BJ192180
EST:     TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG                         CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: gi|18328945|gb|BJ160951.1|BJ160951
EST:     TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG                         CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: gi|18367934|gb|BJ200017.1|BJ200017
EST:     TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG                         CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: gi|18372309|gb|BJ203911.1|BJ203911
EST:     TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG                         CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
EST: gi|18372886|gb|BJ204488.1|BJ204488
EST:     TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAG                         CGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG
genomic: TGGTGCGCGCCCAGGCGTTGCGTGCCTCCTCGTCCATTGGGGTTCTTCAGgttaggtttg ... gggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtttgtgggtcttgaattgggtttttgagctggtgtttatttgggtggacagCGGGGACCGGTTGGAAGTGCATCGCCTTTGCAACAGGTGCGGGAGTACGTGGTGTCGTCGTCTCCTTCAG
                                    tgtttattt  TA-rich tract