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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaactggctctggaaccgaggtttttgtttgcaggaggttttcatcagcttcagtatttgagtcccagcctcatgttatgtgcagcttctgtgtggcagTTGTGTAAGCCGCCTTCACACGTTTTTCTCTGTCAGAGTGACGCATGTATTAAAAACAGTAGTGATAAATATCATCCCCAAGGTTCATATTTCTTGCGGT

Basic information

species Physcomitrella patens
transcript PP1S152_87V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|208351566|gb|DC909996.1|DC909996
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|18369143|gb|BJ201228.1|BJ201228
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCT                         TTGTGTAAGCCGCCTTCACACGTTTTTCTCTGTCAGAGTGACGCATGTATT
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTgtactattac ... tgtgtggcagTTGTGTAAGCCGCCTTCACACGTTTTTCTCTGTCAGAGTGACGCATGTATT
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg
EST: gi|67508440|gb|BJ941307.1|BJ941307
EST:     GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGGCCTCTTCTGTGT                 
genomic: GTTCGATTGCGTTGAAGCTCTCTCCCCTCGAGCCCCGGCGTCCATGG---C--C----Tgtactattac ... tg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcttcagtatttgagtcccagcctcatgttatgtgcagcttctgtgtggcagTTGTGTAAGCCGCCTTCACACGTTTTTCTCTGTCAGAGTGACGCATGTATTAAAAACAGTAGTGATAAATATCATCCCCAAGGTTCATATTTCTTGCGGT
                                         cttctgt  CT-rich tract
        agtattt  TA-rich tract