1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcgtggatcattttctactggatgataaatccttctaggtttgaattacagtagatgtcagtcgatgcattgataatttctcctctatgtttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
species | Physcomitrella patens |
transcript | PP1S14_29V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCCGCTCATGTCACCTTCTACCAGTTCAATTCGGATTCCAACCAATGG AGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAGEST: gi|100386881|gb|BY988150.1|BY988150
genomic: CTGCCGCTCATGTCACCTTCTACCAGTTCAATTCGGATTCCAACCAATGGgtatgttgcg ... ttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
EST: CTGCCGCTCATGTCACCTTCTACCAGTTCAATTCGGATTCCAACCAATGG AGTCGCANGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAGEST: gi|100425375|gb|BY958563.1|BY958563
genomic: CTGCCGCTCATGTCACCTTCTACCAGTTCAATTCGGATTCCAACCAATGGgtatgttgcg ... ttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
EST: GCCGCTCATGTCACCTTTCTAC-AGTTCAATTTCGGATTC-AACCAATGG AGTCGCAGGGAAGTGGAGGGTTCACTTEST: gi|100414699|gb|BY956820.1|BY956820
genomic: GCCGCTCATGTCACCTT-CTACCAGTTCAATT-CGGATTCCAACCAATGGgtatgttgcg ... ttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTT
EST: TGCCGCTCATGTCACCTTCTACCAGTTCAATTCGGGAT-CCAACCAATGG AGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
genomic: TGCCGCTCATGTCACCTTCTACCAGTTCAATTCGG-ATTCCAACCAATGGgtatgttgcg ... ttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
ttacagtagatgtcagtcgatgcattgataatttctcctctatgtttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
tttctcctctatgttt CT-rich tract
attgataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtggatcattttctactggatgataaatccttctaggtttgaattacagtagatgtcagtcgatgcattgataatttctcctctatgtttgattccagAGTCGCAGGGAAGTGGAGGGTTCACTTTTTGTAGTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG