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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgtttctgattctttatttttccgcccttgtctgtttctatctttttagaaagattactctactgtctcacctgggatttggggtaactttaccaagGTCATCAACGAGTTCAAGGTGATGCTATCGTTGCGTACGAGAGATCGCGAGCTGCAACGTCTGCCATAAGTTGGTTCAGCAACACGGAGTTCATGATGGC

Basic information

species Physcomitrella patens
transcript PP1S148_65V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352973|gb|BJ185028.1|BJ185028
EST:     GGAGCTTCTCTGTGCCGTGTTTCTACCAGCTTCATCGCCTCCGCAACCAG                         GTCATCAACGAGTTCAAGGTGATGCTATCGTTGCGTACGAGAGATCGCGAG
genomic: GGAGCTTCTCTGTGCCGTGTTTCTACCAGCTTCATCGCCTCCGCAACCAGgttcatcaca ... ctttaccaagGTCATCAACGAGTTCAAGGTGATGCTATCGTTGCGTACGAGAGATCGCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagaaagattactctactgtctcacctgggatttggggtaactttaccaagGTCATCAACGAGTTCAAGGTGATGCTATCGTTGCGTACGAGAGATCGCGAGCTGCAACGTCTGCCATAAGTTGGTTCAGCAACACGGAGTTCATGATGGC
                                       gggtaac  putative branch site (score: 3)
                                             ctttacc  CT-rich tract
       aaagatta  TA-rich tract