1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttaaagtcgttcatacgtgggcctcaactactaatgtatggctgtataatgagatcctcaagcttaggaagggacacctgatatttttgtggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAGCGCGTGGCAGTCAAATACTTTTCAGATGACTGGCCTAGCTTGTCTGCTA
species | Physcomitrella patens |
transcript | PP1S13_191V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGAT GCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAGEST: gi|67573523|gb|BJ946347.1|BJ946347
genomic: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGATgtaagtagaa ... tggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAG
EST: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGAT GCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAGEST: gi|208350336|gb|DC906038.1|DC906038
genomic: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGATgtaagtagaa ... tggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAG
EST: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGAT GCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAG
genomic: CGTTGCCAAACTTGGGGGCAATTGGCGACTATTACTCTTGTAAAATGGATgtaagtagaa ... tggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAG
tataatgagatcctcaagcttaggaagggacacctgatatttttgtggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAGCGCGTGGCAGTCAAATACTTTTCAGATGACTGGCCTAGCTTGTCTGCTA
acctgat putative branch site (score: 2)
tttttgt CT-rich tract
tgatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaagtcgttcatacgtgggcctcaactactaatgtatggctgtataatgagatcctcaagcttaggaagggacacctgatatttttgtggtttgtagGCTTCTACTCCTCTGGTGAAGAATGTGTTACTTCTTGATGGTGAGGGGAAGCGCGTGGCAGTCAAATACTTTTCAGATGACTGGCCTAGCTTGTCTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG