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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttacgttccaaattttacgcagtttagtaactcaagatggtgacatattaatatggagccttgaattgaccgaaatataattttgttgtgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCATATTCAAAATTTCACATCAAAAGAGTCGTTATATTTACGATCTCTTTTA

Basic information

species Physcomitrella patens
transcript PP1S139_95V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S139_95V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
----ttttacgttccaaattttacgcagtttagtaactcaagatggtgacatattaatatggagccttgaattgaccgaaatataattttgt-tgtgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCATATTCAAAATTTCACATCAAAAGAGTCGTTATATTTACGATCTCTTTTA
    || |   || |  ||   |  ||| |  | |  |     | ||  | | ||           |  || | ||    | |   || | | | |      ||||||| |||||  | ||||| ||||||||||||||||||||| | ||||| || ||||||||  ||||||| ||||| ||||||||||  ||||| |   |
gttattctctttttctcatgc-atacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835716|gb|BJ593728.1|BJ593728
EST:     TAAAATGCGTGAAG                         CTGAGAATGAAACNCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCA
genomic: TAAAATGCGTGAAGgtgcgtcgat ... tgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCA
EST: gi|37828710|gb|BJ586722.1|BJ586722
EST:     GAACTAGAAACTAAAATGCGTGAAG                         CTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCA
genomic: GAACTAGAAACTAAAATGCGTGAAGgtgcgtcgat ... tgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattaatatggagccttgaattgaccgaaatataattttgttgtgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCATATTCAAAATTTCACATCAAAAGAGTCGTTATATTTACGATCTCTTTTA
                             aaatataattttgttg  TA-rich tract