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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtactactcgtaaggtcgcgttgacagtgtaatatgtggccgaatggtcttcattgaagactgaactttactgaagaactttttgtttgtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCGAAATGTGTACATTCGATTCTCTGCTTTAACTGGTGACGCAATGGGGATG

Basic information

species Physcomitrella patens
transcript PP1S139_2V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162165992|gb|FC341290.1|FC341290
EST:     TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAG                         AACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
genomic: TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAGgtaggtcgct ... gtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
EST: gi|162177083|gb|FC353136.1|FC353136
EST:     CGATACCATTGCACACATGTTCAACAG                         AACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
genomic: CGATACCATTGCACACATGTTCAACAGgtaggtcgct ... gtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
EST: gi|19779306|gb|BQ039421.1|BQ039421
EST:     TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAG                         AACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGG
genomic: TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAGgtaggtcgct ... gtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGG
EST: gi|162169988|gb|FC345928.1|FC345928
EST:     TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAG                         AACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
genomic: TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAGgtaggtcgct ... gtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
EST: gi|162206974|gb|FC382983.1|FC382983
EST:     TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAG                         AACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG
genomic: TTCCTTGAAGATCCCAACAACTTCGATACCATTGCACACATGTTCAACAGgtaggtcgct ... gtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtcttcattgaagactgaactttactgaagaactttttgtttgtggtgtcagAACTAGTCGCTTCGGTAGGCTGAAGCACCTTAAATGTCAGTTGGCTGGGCGAAATGTGTACATTCGATTCTCTGCTTTAACTGGTGACGCAATGGGGATG
                                    tttttgttt  TA-rich tract