1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtctattgtacctagtttctttgaaccctacactatttctagacagaacatatcttccagatttcccttgttttgagatatggtgaacgtgtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGCAATGTTATCGTTGTTGATAACTTGCCGGTCGTAGCTTCTGAGAAGTAC
species | Physcomitrella patens |
transcript | PP1S138_36V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGEST: gi|18372986|gb|BJ204588.1|BJ204588
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGEST: gi|18368748|gb|BJ200833.1|BJ200833
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTANAAACTGACACAGGTTTTGGEST: gi|18360423|gb|BJ192485.1|BJ192485
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGEST: gi|18352844|gb|BJ184899.1|BJ184899
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGEST: gi|18369581|gb|BJ201669.1|BJ201669
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
EST: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAG TGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
genomic: GATTTGGACTCCATTATGTTGCCCCCCGGAGATGATATGGGCATCAAGAGgtacgtactc ... gtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGG
gaacatatcttccagatttcccttgttttgagatatggtgaacgtgtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGCAATGTTATCGTTGTTGATAACTTGCCGGTCGTAGCTTCTGAGAAGTAC
tgttttt CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctattgtacctagtttctttgaaccctacactatttctagacagaacatatcttccagatttcccttgttttgagatatggtgaacgtgtttttgcagTGATGACGAAGAGGAGGAGGAGGAAACCTTAGAAACTGACACAGGTTTTGGCAATGTTATCGTTGTTGATAACTTGCCGGTCGTAGCTTCTGAGAAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT