1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccgtctctggagggtttgtgcatatttgagtgtttggtcaatttatgtcaggatttttgttgttgctttctctaattgtgatatcgattatctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTGGTTTCAGTTTGACTGGAGTTGGAGAGTAGCCTTGAAACTTTTGCTAAT
species | Physcomitrella patens |
transcript | PP1S138_142V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18328157|gb|BJ160161.1|BJ160161
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18355547|gb|BJ187606.1|BJ187606
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18367051|gb|BJ199131.1|BJ199131
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18360330|gb|BJ192392.1|BJ192392
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18372931|gb|BJ204533.1|BJ204533
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18375257|gb|BJ206835.1|BJ206835
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18358684|gb|BJ190743.1|BJ190743
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTEST: gi|18364099|gb|BJ196172.1|BJ196172
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
EST: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAG GGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
genomic: TCCTCACGCGCCGTCTCTTCCTTCCTTCCCTCCTACTTCCCCTGCCCCAGgtaagcatcc ... atctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTT
atgtcaggatttttgttgttgctttctctaattgtgatatcgattatctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTGGTTTCAGTTTGACTGGAGTTGGAGAGTAGCCTTGAAACTTTTGCTAAT
ctctaat putative branch site (score: 12)
ttatctcttc putative PPT
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccgtctctggagggtttgtgcatatttgagtgtttggtcaatttatgtcaggatttttgttgttgctttctctaattgtgatatcgattatctcttcagGGTCTTGAGGAAGAGGATAGCGTTCACTGAGGACGTGGTGGGGCTCACCTTGGTTTCAGTTTGACTGGAGTTGGAGAGTAGCCTTGAAACTTTTGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA