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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgaaggtgtagagtttgtttggttagttttgaatggtgagtttgtaaacttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_220V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA10G10000.1 (Glycine max), 3'ss of exon 1
tttgaaggtgtagagtttgtttggttagttttgaatggtgagtttgtaa-acttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC
 ||     |  |   |   ||| |     |||   |      ||  ||| | ||  |||| |  |  | |||| ||   || ||||         |  |||||||| || ||| | || ||    ||  | |      |||| ||||| |  ||| |||||||  |||||||||||||||| |||||| ||||||| ||||
gttcgctcttcaacttcgatttcgcactcttttggttcaacattcttaacattttttttttggttcttatgttgttgtcttctgtt---gtgtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTTGATCACTTCGAGCGGAAGCGCAAGAAAGAGGCGCGTCAAGTTCACAAAC

upper sequence: PP1S136_220V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA10G00490.1 (Glycine max), 3'ss of exon 1
-------tttgaa----ggtgtagagtttgtttggttagttttgaatggtgagtttgtaaacttacttttggtattct-gtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC
        || ||    | | | |   |  |||||| |   ||   ||     | |      ||| | ||  ||||||  |||| ||    | ||||         |  |||||||| || ||| | || ||    ||  | |      |||| ||||| |  ||| |||||||  |||||||||||||||| |||||| ||||||| ||||
gttcgctcttcaacttcgatttcgcactcctttggtcaaccttct-tgacatttgttcttttttattattattattcttatgttgttgtcgtgtgtt---gtgtaattgcagCCGCAAGGGGATTACATAGAGCGTCACAGAAGAGACTATGGCTACCGTCTCGATCACTTCGAGCGGAAGCGCAAGAAAGAGGCGCGTCAAGTTCACAAAC

upper sequence: PP1S136_220V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ37687 (Selaginella moellendorffii), 3'ss of exon 1
tttgaaggtgtagagtttgtttggttagttttgaatggtgagtttgtaaacttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC
                       || ||   |   || |   ||||      | |||   | |  |    | ||   |||| || | | |     | ||||| ||||||||| | || || ||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || || || || || |
-----------------------gtaagcgctct-tgctcgatttgc-----ttcttgcagcagcccagctgatagattttcgtctgcgcc----atcagCCTCAGGGAGATTACATCGATTTGCACCGCAAGCGGCATGGGTACCGCCCGGATTACTTCGAAAGGAAACGCAAGAAGGATGCTCGGGAGGTCCACAAGC

upper sequence: PP1S136_220V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ15002 (Selaginella moellendorffii), 3'ss of exon 1
tttgaaggtgtagagtttgtttggttagttttgaatggtgagtttgtaaacttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC
                       || ||   |   || |   ||||      | |||   | |  |    | ||   ||||  ||| | |     | ||||| ||||||||| | || || ||||| |||||||| ||||||||||| | |||||||||||||||||| |||||||| ||||| || || || || || |
-----------------------gtaagcgctct-tgctcgatttgc-----ttcttgcagcagcccagctgatagattttcatttgcgcc----atcagCCTCAGGGAGATTACATCGATTTGCACCGCAAGCGGCATGGGTACCGCCTGGATTACTTCGAAAGGAAACGCAAGAAGGATGCTCGGGAGGTCCACAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429205|gb|BY977993.1|BY977993
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|18356860|gb|BJ188919.1|BJ188919
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100352388|gb|BY983183.1|BY983183
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208393325|gb|DC903999.1|DC903999
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208351521|gb|DC909979.1|DC909979
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162208445|gb|FC384408.1|FC384408
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162168874|gb|FC345348.1|FC345348
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|67507874|gb|BJ940750.1|BJ940750
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162273379|gb|FC449828.1|FC449828
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208387752|gb|DC941321.1|DC941321
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100399380|gb|BY954341.1|BY954341
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100375740|gb|BY968173.1|BY968173
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|18356553|gb|BJ188612.1|BJ188612
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100402534|gb|BY954883.1|BY954883
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100440241|gb|BY962134.1|BY962134
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100411094|gb|BY956321.1|BY956321
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|18352296|gb|BJ184350.1|BJ184350
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162199735|gb|FC375974.1|FC375974
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     GCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: GCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100396887|gb|BY953877.1|BY953877
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208365753|gb|DC935808.1|DC935808
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100437696|gb|BY979783.1|BY979783
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208344530|gb|DC905091.1|DC905091
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208390066|gb|DC938121.1|DC938121
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|18351604|gb|BJ183656.1|BJ183656
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208385275|gb|DC915075.1|DC915075
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100380682|gb|BY986734.1|BY986734
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208375393|gb|DC940475.1|DC940475
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208391122|gb|DC942062.1|DC942062
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100392655|gb|BY971818.1|BY971818
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208373470|gb|DC941067.1|DC941067
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|67576486|gb|BJ949310.1|BJ949310
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|208369176|gb|DC936033.1|DC936033
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100361629|gb|BY966146.1|BY966146
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|67576705|gb|BJ949529.1|BJ949529
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100447434|gb|CJ971733.1|CJ971733
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|18363960|gb|BJ196033.1|BJ196033
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100366881|gb|BY948257.1|BY948257
EST:     ACGCCCAAGCCACAAACCACGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100415702|gb|BY992962.1|BY992962
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|162212960|gb|FC389176.1|FC389176
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100425001|gb|BY976922.1|BY976922
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
EST: gi|100392894|gb|BY989661.1|BY989661
EST:     ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATG                         CCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG
genomic: ACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 31 (downstream exon)
Score: 21

TAATTTGCGAGGTTGTTCTCTCATTCCCTCCTTCACGCCACTTCCCCCTCACGCCCAAGCCACAAACCTCGTGGCGGTGTTTTGAAAGTCTTTCACCATGgtaagctctc ... tgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaacttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC
   aacttac  putative branch site (score: 21)
                                tttttgtttccact  putative PPT
                         ttatttgtttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgaaggtgtagagtttgtttggttagttttgaatggtgagtttgtaaacttacttttggtattctgtgttatttgtttttgtttccactgggtaacagCCGCAGGGAGATCATATTGACTTGCATCGCAAGCGTCATGGGTACCGACCGGATTACTTCGAAAGGAAGCGCAAGAAAGATGCGCGTGAAGTTCATAAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG