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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccaccttcctctctcttgacgtcttacattcttgctttcggcctcgccattttcaagattatcaccggcaattcaccttcttcacttggttttcatccaagagtgcaaccaggatattgcaactaagctgtggtattgttcgatattgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCTATATATG

Basic information

species Physcomitrella patens
transcript PP1S134_62V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173948|gb|FC349748.1|FC349748
EST:     TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGG                         GAACGAAGCTTATGACTCCGGAAAGGCAACGTGC
genomic: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccac ... ttgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGC
EST: gi|162217988|gb|FC393672.1|FC393672
EST:     TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGG                         GAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCCATATATG
genomic: TGTTCGCTGCGGCGAGGTTTGTGCTGAGTACTCGAAGACCTTCTATCTGGgtaagaccac ... ttgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCTATATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgcaaccaggatattgcaactaagctgtggtattgttcgatattgatgacagGAACGAAGCTTATGACTCCGGAAAGGCAACGTGCCATTTGGGCTATATATG
                                           tattgat  putative branch site (score: 3)
                                          atattgat  TA-rich tract