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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG

Basic information

species Physcomitrella patens
transcript PP1S134_151V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggttt-ttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
|| |||   | ||| |  |  |  | | |  |||   |||| || |  |  |     |  | ||   |||  | |         ||||   | | | |     |   | |||||| ||      |||||||||||||||| |   |||||| ||||||| ||| ||||| || ||| || | ||| ||| ||| || || ||||||||||||||||||| ||| | 
gtgagctcctcctc-cgacgccgcctccctccatcactctc-gtctccagtt-----tcccacccctccacctcca--------tctctctcctgatccgtcctccgtcgttttgctgtgcac-agGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                                   || ||||    |||| |   ||||| | |    | |||||| |        ||   |  |   | |  |  || | | | ||      |||||||||||||||| |   |||||| ||| ||| ||| |||||||||||| |||| ||| ||| ||| || |||||||||||||||||||||| ||| | 
---------------------------------gtgagctct---cgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtcgtatcattttgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcg-gaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                                          ||| | |  ||   |||  | ||  ||      | |||    | | |  | | |  ||  | |  |   || || |      ||| |||||||||||| |   ||| || ||||||| ||| ||||| || ||| |||||||| ||| ||| || |||||||||||||||||||||| |||   
------------------------------------------gtgagcaaatgtt-ctgtggtctctccgtgcaggcgaacctttgcgcgtcgtctctctctgatagtctgttcgtcgcgc---agGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGATGCGCTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcgga---atgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                                          ||| ||    ||     | |||    | |||||| |   |||  || | |  |  ||  | |  |  || | | | ||      ||| |||||||||||  |   |||| | ||||||| ||| || ||||| ||| |||| ||| ||| ||| || |||||||||||||||||||||| ||| | 
------------------------------------------gtgagttctcggctacaaggccgtctccgattcgcatgcatgggttttta--cggtatgttgcatcgtt-tctcgctgtggcgcagGGGCGTACAAGTATGTCTCGGAGTTATGGAGGAGGAAGCAATCCGACGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                               | ||| | ||| |      |       |   |  ||||  | ||| |||  |  ||| |  |       ||  | ||   || |       ||  |||  |  |  |||  ||||  | ||||||||||||||||  |    ||||| |||||||||||||||||||||||| || | ||||| | | | ||| | |||||||||||||| ||||  ||   
gtaaatccttcttctccatcccttcttctagatcaaatcctctcgtttcttagatcgattcagcttctccat-tgtttgttcaaatgatgtttct----gttacgtatctgttattgcaaactacttagcttaatgatttgattga--tatagGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EDP06755 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcg-tcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG-----------
                      |||  | | |||  |     |    | || || ||| | || | |||   ||||         ||| ||| |        |||   | |||  ||| |               |||||||||||||||||||| | ||||| |||  ||||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||| |           
---------------------gtgcgatagctcaaagcctcataccagcatctgcagccgccggccgac---attc---------tctgaacttacgcgactggtcgctctttccttggaccccgc---------agTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTGCTGCGTGTGCGCTGCTGGGAGTACCGCCAGATGCCCAGCTGCGTGCGCC

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                                                    | |      ||  || ||| |  ||         |   |      ||       ||  ||  |     |  |||||| ||||||||||| |||||||| ||| ||||||| || ||||||||| ||||||||||| |||| || ||||||||||||||  | ||||| |||||
----------------------------------------------------gtaagcactgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGATGCGCTTCCTGATGCGCGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGG

upper sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                                                    | |   |  ||  || ||| |  ||         |   |      ||       ||  ||  |     |  |||||| ||||| ||||| |||||||| ||| ||||||| || ||||||||| ||||||||||| |||| || ||||||||||||||  | ||||| |||||
----------------------------------------------------gtaagcgttgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctctccagGTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGATGCGCTTCCTGATGCGCGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372242|gb|BJ203844.1|BJ203844
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67709530|gb|BJ965346.1|BJ965346
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162261579|gb|FC437596.1|FC437596
EST:     GAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: GAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18372011|gb|BJ203613.1|BJ203613
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|37828653|gb|BJ586665.1|BJ586665
EST:     GCGCAGGCGAGCCGCTGTCTNTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: GCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|208391739|gb|DC937957.1|DC937957
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162230273|gb|FC406629.1|FC406629
EST:     AGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: AGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67709503|gb|BJ965319.1|BJ965319
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162230274|gb|FC406630.1|FC406630
EST:     ATCGTCGCAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67704003|gb|BJ964236.1|BJ964236
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|100358463|gb|BY983918.1|BY983918
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGGGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162203968|gb|FC380260.1|FC380260
EST:     ATCGTCGCAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67704640|gb|BJ964873.1|BJ964873
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162226970|gb|FC403340.1|FC403340
EST:     GTCGCAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: GTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67727062|gb|BJ977321.1|BJ977321
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67718614|gb|BJ968873.1|BJ968873
EST:     ACCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18371655|gb|BJ203257.1|BJ203257
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGATCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGANCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67702581|gb|BJ962814.1|BJ962814
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|100404702|gb|BY991240.1|BY991240
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18349690|gb|BJ181740.1|BJ181740
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67704189|gb|BJ964422.1|BJ964422
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67702172|gb|BJ962405.1|BJ962405
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67704315|gb|BJ964548.1|BJ964548
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67704257|gb|BJ964490.1|BJ964490
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162217804|gb|FC394104.1|FC394104
EST:     ATCGTCGCAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|208352427|gb|DC906196.1|DC906196
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67717597|gb|BJ967856.1|BJ967856
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|37826884|gb|BJ584896.1|BJ584896
EST:     TGCGCCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: TGCG-CAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|37842969|gb|BJ600977.1|BJ600977
EST:     GGAGCCACGCTTNTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: GGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67727044|gb|BJ977303.1|BJ977303
EST:     ACCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67718636|gb|BJ968895.1|BJ968895
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18350515|gb|BJ182566.1|BJ182566
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162261580|gb|FC437597.1|FC437597
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67720668|gb|BJ970927.1|BJ970927
EST:     CTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: CTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|208368005|gb|DC951016.1|DC951016
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67702445|gb|BJ962678.1|BJ962678
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGGGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67692800|gb|BJ953033.1|BJ953033
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162226969|gb|FC403339.1|FC403339
EST:     CAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: CAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18347801|gb|BJ179848.1|BJ179848
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|37852815|gb|BJ610823.1|BJ610823
EST:     TCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: TCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|100429626|gb|BY959657.1|BY959657
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67699601|gb|BJ959834.1|BJ959834
EST:     ACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162245469|gb|FC424062.1|FC424062
EST:     ATCGTCGCAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|162245468|gb|FC424061.1|FC424061
EST:     CAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: CAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|208383809|gb|DC903565.1|DC903565
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|208346508|gb|DC917461.1|DC917461
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|67569531|gb|BJ942355.1|BJ942355
EST:     TCGTCGGAGCCACGCTTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: TCGTCGGAGCCACGC-TTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
EST: gi|18359406|gb|BJ191467.1|BJ191467
EST:     ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGG                         GTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC
genomic: ATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 33 (downstream exon)
Score: 14

AACGAGCCCCCAGAAACGCTCTTTTTCGTGATCCCCCATCGTCGGAGCCACGCTTCTGCGCAGGCGAGCCGCTGTCTCTCATCATGGgtaagcaatt ... tgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG
                     ctttaac  putative branch site (score: 14)
                                       ttttgtt  putative PPT
                                 tttttgttttgttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaatttctcgcagcctctgccctcgtcatggatctctgtgtgtatgtggagctgacgcctgaccagattcggaatgaattctcaacctttaactagggtttttgttttgttgaattttagGTGCGTACAAGTACATTGAGGAGCTGTGGAGGAAGAAACAGTCCGATGTGCTGCGCTTCCTGCTGCGTGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC