1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagatttatgtgagatttagcggttattgggattgtcatgtgcattaaaatggtcgggcaatgtgggtggcgtggttttcagtaaagctggtggatgaaacgctgttgtgaagactctgcgtatctctgagtattgacattggaacattgggtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACAGCCACTATCATGCTGCTCGGTGACACTTGCACTCGCGGATGCCGATTTT
species | Physcomitrella patens |
transcript | PP1S12_246V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAG TGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACAEST: gi|162196790|gb|FC373871.1|FC373871
genomic: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAGgtgagattta ... gtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACA
EST: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAG TGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACAEST: gi|18327286|gb|BJ159288.1|BJ159288
genomic: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAGgtgagattta ... gtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACA
EST: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAG TGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTAEST: gi|162167643|gb|FC343762.1|FC343762
genomic: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAGgtgagattta ... gtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTA
EST: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAG TGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACA
genomic: TGAAGCTGAATACCGTTTGTGAGGAAGCGCAATGCCCCAACATTGGAGAGgtgagattta ... gtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACA
tgtgaagactctgcgtatctctgagtattgacattggaacattgggtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACAGCCACTATCATGCTGCTCGGTGACACTTGCACTCGCGGATGCCGATTTT
tattgac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttatgtgagatttagcggttattgggattgtcatgtgcattaaaatggtcgggcaatgtgggtggcgtggttttcagtaaagctggtggatgaaacgctgttgtgaagactctgcgtatctctgagtattgacattggaacattgggtcgggtcagTGTTGGAATGGTGGCGGAGGAGCAGGGGGTGAAGGGGATGGCATTGCTACAGCCACTATCATGCTGCTCGGTGACACTTGCACTCGCGGATGCCGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT