1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...gaattctatgttttctcttagctagaggtgacaagtccttcaaccgcctgaaattgcgatcgttggttatctaattttttgtggctttgtctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTGATTCCGTGGCAATGGAGACCGCACAGAACAGGCGGATGCGCATCATGA
species | Physcomitrella patens |
transcript | PP1S12_178V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCG TTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTEST: gi|18367260|gb|BJ199342.1|BJ199342
genomic: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCGgtaagcttac ... ctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCT
EST: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCG TTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTEST: gi|100409701|gb|BY956063.1|BY956063
genomic: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCGgtaagcttac ... ctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCT
EST: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCG TTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTEST: gi|100411405|gb|BY974620.1|BY974620
genomic: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCGgtaagcttac ... ctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCT
EST: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCG TTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCT
genomic: CACCATCGGGGTGCATCTCCAAGAGATCAATCGTGTGTAACTGGTTTTCGgtaagcttac ... ctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCT
gcctgaaattgcgatcgttggttatctaattttttgtggctttgtctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTGATTCCGTGGCAATGGAGACCGCACAGAACAGGCGGATGCGCATCATGA
atctaat putative branch site (score: 5)
ctttgtct putative PPT
ttatctaattttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattctatgttttctcttagctagaggtgacaagtccttcaaccgcctgaaattgcgatcgttggttatctaattttttgtggctttgtctattggcagTTTTTAGATTCTGCAGTACTTAAAAAGACAAGGAAGGGGGAGATGGAAGCTGATTCCGTGGCAATGGAGACCGCACAGAACAGGCGGATGCGCATCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA