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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Basic information

species Physcomitrella patens
transcript PP1S126_52V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1
tgtgatggagtggcgtatttttgtg-ttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA--
|    ||| ||||  | ||  ||    ||||  |   |   || | | |  |||        | || | | |   |    |||  |   ||||| || | |   | |  |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||| |||||||| | ||| ||||| ||||||||||||||||  
taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgtaggtaagG---TAAGCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1
-tgtgatggagtg-gcgtatttttg-tgttgttgttgtaattcgtgaagc-aataattagggtcggattgttgatgtcgcaatttttgtgatgtgtat--gtgaagAGTTGA-------AACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
 |||| | || || ||||   | || | | |  | ||||  ||| |  |    || |    |  |    |||  |||     ||| ||||||| | |   || |  ||  ||       || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| | ||| ||||| |||             
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatcgggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-------------

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1
tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaagcaataattaggg-tcggat--tgttgatg-tcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
|    |    ||| ||   ||| || ||    ||| | |   ||     ||   |||  ||| ||  || | ||| |     ||| | |||| ||     |   || | |  |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||| |||||||| | ||| ||||| |||||||||||||   
ttcagtaatctggtgtggatttttgctgcaactgttagtaa-gagctgttaggaaggaatcgcatgatgcttatggtttgtgtttgtttgatttggtgtagGTAAGGTAAGCCATGGTGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC---

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
--tgtgatggagtggcgtatttttgtgttgttgt---tgtaattcgtgaagcaataattag-ggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAA----------ACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
    || |    |  |||  |  || | |   |    || |  |   |  ||     ||   | || | | | ||| || |  |||    ||| ||| | || |  || | |           | ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| |||||||| | ||| |||||                 
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC----------------

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1
tgtgatggagtggcgtatttttg--tgttgttgttgtaattcgtgaagcaataattagggtcgg-attgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACA----------TGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
||     | | |||   |  |||  | |||||   ||  |  |        |  |    |  |     ||   ||| ||  | ||  || |||  | || |  ||  || | |          |||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| ||||| |||||           
tggagctg-gcggcagctcgttgattcttgttcccgtggtgtgctcgttgctcgtctctgctgatgccgtcactgttgcgttgttgatg-tgtacaggtaagAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA-----------

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1
-------tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaa-gcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAA-------ACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
         || |||     |||   ||  ||||   || ||  ||  ||   |       |   | ||  ||| || ||  |     ||  ||||||| | || | |||  |||       | ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| ||||| |||             
agatggagctgttggcagctcgttgattcttgttcccgtggtgtttgttgttcgtctcggctgacgccg--ttgctgttgatgtggcgttgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-------------

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1
tgtgatggag-tggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggat-tgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC------------------ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
|  | ||||| |||||     | || |  || ||||    ||||  |   |  ||  | |||  | || ||||| ||  | | ||| | |||  ||||| | || | | |                   ||||||||||| ||||| || |||||||| || |||||||||||| ||||||| |||||||| | ||| |||||                 
tagggtggagctggcggcagctcgt-tgattcttgtt-cccgtggtgtgctcgtt--gctcgtctctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC----------------

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1
tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA--
  |  |    |        ||||        ||||  ||  |  |  |  |  || | |     ||||| | |     || || |  |||     |    || | | | ||||| ||||||||||| |||||||||||||| ||||||| |||  |||||||||||||||||| ||| |||||||| || || || || |  
catagtattttaattggggtttgcagctgatttgtcttttatacatgatca--tatgttgaccctgttgttttttttgttcttttattgttgtcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
----tgtgatggagtggc-gtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC-ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
    |||||| ||   ||  |  ||  |  || ||||  | || |    | |       |   ||  | |  || |||||    |    || | ||| |  |   ||   || | ||||| |||||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||| ||||||||| || ||||| ||     
tgtttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA----

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
tgtgatggag-tggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAAC-ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA-
 ||||| ||  ||   |  ||  |  || ||||  | || |    | |       |   ||  | |  || |||||    |    || | ||| |  |   ||   || | ||||| |||||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||| ||||||||| || ||||| || || | 
-gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact--tgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G17370.1 (Glycine max), 3'ss of exon 1
tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtg-aagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA--
| |  |    |        |||||  |    ||||  ||  |  | |   | ||   |  |   |||||    | |   ||||  || |||  || || ||   | |   ||||| |||||||| ||||||||||||||||| ||||||  |||  |||||||||||||||||| ||| |||||||| || || ||||| |  
tatagtatgttaattggggtttgtagttgatttgtcttttttatatgatcttatgtcgaccctgttgttttatttgttcttttattgctgta-atttgtagG--TAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
------tgtgatggagtggcgtatttttgtgttgttgttgtaattc-gtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
      ||| |   |   ||   |||      | ||||  | || |  | |    || |            |||||  || |     |||   ||||||| |  |||     || |||||| |||||||||||||||||||| || || ||||||   ||| ||||||| |||||||||| ||| ||||| || ||||| ||     
gttgattgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgacttta--atgtgtaagGTAAGC-CAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA----

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
-tgtgatggagtggcgtatttttgtgttgttgttgtaattc-gtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA-
 ||| |   |   ||   |||      | ||||  | || |  | |    || |            |||||  || |     |||   ||||||| |  |||     || |||||| |||||||||||||||||||| || || ||||||   ||| ||||||| |||||||||| ||| ||||| || ||||| || || | 
ttgttagttatctgctattttacactatcttgtgcttatcctattaccttattacataatctaacctgttgtcgtggttgacttta--atgtgtaaggtaagC-CAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgat--gtgtatgtgaagAGTTGAAAC----ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
  |  ||   | |    ||   || || |  ||  | ||| |  |||  |  |||  ||   ||  ||    |   | | | | ||||   ||| | |    || |  |          ||||||| |||||||||||||||||||| |||||||| ||| ||||||| || ||||| | ||| ||||| |||||||| ||| |  
--ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgt--ttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG--

upper sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
tgtgatggagtggcgtatttttgtgttgttgttg---taattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA--
| |  |    |  |  |||||||||||  | |||   || || |||| | |   |  |  |    |||  |||||      | |||||| ||      |  | || | |  |||||| ||||||||||||||| | || ||||| |||||||||||  | ||||| || ||||| |  || ||||||||||| || || ||||  
tcttttttcatt-cagatttttgtgtttcttttgagttattttgtgacggagctaa-atcgcaaaatttgtgatggtattttgtttgtgctgc---catttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265032|gb|FC440911.1|FC440911
EST:     CACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162218145|gb|FC394982.1|FC394982
EST:     TTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162222749|gb|FC399003.1|FC399003
EST:     CTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67699691|gb|BJ959924.1|BJ959924
EST:     TTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67576194|gb|BJ949018.1|BJ949018
EST:     CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67699716|gb|BJ959949.1|BJ959949
EST:     GCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: GCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162252357|gb|FC426165.1|FC426165
EST:     GTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: GTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162274823|gb|FC450850.1|FC450850
EST:     TCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67574166|gb|BJ946990.1|BJ946990
EST:     CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67698454|gb|BJ958687.1|BJ958687
EST:     GCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: GCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|18351988|gb|BJ184040.1|BJ184040
EST:     CTCTCCAGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CTCTCCAGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67697564|gb|BJ957797.1|BJ957797
EST:     CTCTCCAGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CTCTCCAGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67573151|gb|BJ945975.1|BJ945975
EST:     TGCTTTGCATGCTCCTGAAG                         AGTTGACACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162274992|gb|FC450851.1|FC450851
EST:     TCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67576924|gb|BJ949748.1|BJ949748
EST:     CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: CCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67572987|gb|BJ945811.1|BJ945811
EST:     GCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: GCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|67696367|gb|BJ956600.1|BJ956600
EST:     AGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: AGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
EST: gi|162218146|gb|FC394983.1|FC394983
EST:     TTCGTGCCGCTGCTTTGCATGCTCCTGAAG                         AGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG
genomic: TTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 21

CTTACTCTCCAGGTTTCCTCACCCTTCGTGCCGCTGCTTTGCATGCTCCTGAAGgtacctcttc ... gtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaataattagggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAAACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA
                   tgttgat  putative branch site (score: 21)
                               aatttttgt  TA-rich tract