1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gaggactcagctgtgcgatcagaattatatcatcagtgagatgtattatcttatcatttctggttctgtttcgtatctcatgggggtgtatgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGCTCTCCCAAAGTTGGAAGAGAACCTTGGGGCTGTGCCTGCTGGTTCCAC
species | Physcomitrella patens |
transcript | PP1S126_38V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18372090|gb|BJ203692.1|BJ203692
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18346979|gb|BJ179025.1|BJ179025
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCTTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18352909|gb|BJ184964.1|BJ184964
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18346023|gb|BJ178066.1|BJ178066
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18354827|gb|BJ186886.1|BJ186886
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18352804|gb|BJ184859.1|BJ184859
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18357801|gb|BJ189860.1|BJ189860
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18329083|gb|BJ161089.1|BJ161089
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18343471|gb|BJ175509.1|BJ175509
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18332430|gb|BJ164443.1|BJ164443
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18344948|gb|BJ176989.1|BJ176989
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18375456|gb|BJ207034.1|BJ207034
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18347429|gb|BJ179475.1|BJ179475
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|100406123|gb|BY991551.1|BY991551
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18373407|gb|BJ204985.1|BJ204985
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18360762|gb|BJ192825.1|BJ192825
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTANTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18364379|gb|BJ196452.1|BJ196452
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18327014|gb|BJ159015.1|BJ159015
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|67719606|gb|BJ969865.1|BJ969865
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGEST: gi|18343482|gb|BJ175520.1|BJ175520
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
EST: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATG GCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
genomic: TCTGCTCTGCTTGCTACTGTCGTTCTCCTCCCTGCAGCTCAACTCCAATGgtatagcctt ... tgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAG
ttatcttatcatttctggttctgtttcgtatctcatgggggtgtatgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGCTCTCCCAAAGTTGGAAGAGAACCTTGGGGCTGTGCCTGCTGGTTCCAC
ttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggactcagctgtgcgatcagaattatatcatcagtgagatgtattatcttatcatttctggttctgtttcgtatctcatgggggtgtatgtagtgcagGCCGTTCTGGACGAGCACATGCGCAGGAAGAATCGAAAATAGATGATGGAGCTCTCCCAAAGTTGGAAGAGAACCTTGGGGCTGTGCCTGCTGGTTCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA