1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattcgactttagtggcagttttgttctgattcacttctaagcccgcttcacattttttccgacactctgtgcagttttcactgattttatgtgcgagaacccaggccttatggcgagtgtctgtgagcttgtcgtatagctttttaagagactgtcttaactggttcacgaccttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG
species | Physcomitrella patens |
transcript | PP1S126_196V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAG TTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACEST: gi|100362435|gb|BY947355.1|BY947355
genomic: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAGgtattcgact ... cttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCAC
EST: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAG TTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACEST: gi|208372398|gb|DC936500.1|DC936500
genomic: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAGgtattcgact ... cttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCAC
EST: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAG TTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACEST: gi|100355557|gb|BY945993.1|BY945993
genomic: ACAGTAGTGCAAAGACAGATACTTCCTCCGACATGGATGGTGACCCTAAGgtattcgact ... cttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCAC
EST: AGTAGTGCAAAGACAGATACTTCCCTC-GACATGNATGGTGACCCCTAAG T-AGATGACGGTCATCATTTAGTCACTGG
genomic: AGTAGTGCAAAGACAGATACTTCC-TCCGACATGGATGGTGACCC-TAAGgtattcgact ... cttttggcagTTAGATGACGGTCATCATTTAGTCACTGG
cttgtcgtatagctttttaagagactgtcttaactggttcacgaccttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG
tcttaac putative branch site (score: 2)
cctttt putative PPT
tttttaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcgactttagtggcagttttgttctgattcacttctaagcccgcttcacattttttccgacactctgtgcagttttcactgattttatgtgcgagaacccaggccttatggcgagtgtctgtgagcttgtcgtatagctttttaagagactgtcttaactggttcacgaccttttggcagTTAGATGACGGTCATCATTTAGTCACTGGAGGCTCAAATGACTCTAGTCACGAAGCTGGAACCAAGAACGGTGACTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC