1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaggaatgttctgatgtggtggtgtagtgagtaggggtttgtgaggctgccgtgttcaccgattaagttggcacgtgttttttgtttttccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATAATAGGCCAGTAAGCAATGGCCACCAAGACTAGCATCGAGCACATCCTA
species | Physcomitrella patens |
transcript | PP1S124_70V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATEST: gi|22492181|gb|BU052104.1|BU052104
genomic: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
EST: TCTTATTCCCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATEST: gi|18357561|gb|BJ189620.1|BJ189620
genomic: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
EST: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATEST: gi|18343444|gb|BJ175482.1|BJ175482
genomic: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
EST: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATEST: gi|18343539|gb|BJ175577.1|BJ175577
genomic: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
EST: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATEST: gi|18352916|gb|BJ184971.1|BJ184971
genomic: TCGCATTCTCTAACGATGATTCGAAGTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
EST: GTCACTCTTCCACATGCTGATCGAG AATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
genomic: GTCACTCTTCCACATGCTGATCGAGgtaaccctcc ... ccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCAT
ggctgccgtgttcaccgattaagttggcacgtgttttttgtttttccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATAATAGGCCAGTAAGCAATGGCCACCAAGACTAGCATCGAGCACATCCTA
tgttttttgtttttcc CT-rich tract
tgttttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggaatgttctgatgtggtggtgtagtgagtaggggtttgtgaggctgccgtgttcaccgattaagttggcacgtgttttttgtttttccatgtgaagAATTTCTGCATCACAAGGTGCTGATCAGGTATTCAGAAGCACCCATCTCATAATAGGCCAGTAAGCAATGGCCACCAAGACTAGCATCGAGCACATCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA