1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtatcgaggggtgggttttgggctgggcgagcgagagagagagggtttcttgatgtcgtctggggtgatttgagccaatgtcggcaggaattggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGGCGGAGAAAGGCGGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCAT
species | Physcomitrella patens |
transcript | PP1S123_22V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAG GAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGGEST: gi|162195419|gb|FC369835.1|FC369835
genomic: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAGgtgggttttt ... ttggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGG
EST: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAG GAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGGEST: gi|67569132|gb|BJ941956.1|BJ941956
genomic: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAGgtgggttttt ... ttggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGG
EST: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAG GAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGG
genomic: GAGCGTGTGAGTGGTGGTGGTACCTACAAGCGGGACATTCGGTAACCGAGgtgggttttt ... ttggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGG
tttcttgatgtcgtctggggtgatttgagccaatgtcggcaggaattggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGGCGGAGAAAGGCGGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCAT
tcttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgaggggtgggttttgggctgggcgagcgagagagagagggtttcttgatgtcgtctggggtgatttgagccaatgtcggcaggaattggtggcagGAAGGTGAGAATTGCGAGAGGTGGAGATTCGGGAGGAGAGGGGCGCAATGGCGGAGAAAGGCGGTCTCGGAACAGTTGGGGCGCTTAGTCTGTCGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA