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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttgtaactgttatggtcggctatggttgctgagggttgctggtacgctgccttagtgagacatgtgctgagcacaaatttgtgttggcaagcagcagGTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCGGAAGCCGCGGCCAACAATCCAGGCTATTGTGGCAGTCCTGATGCAGCCA

Basic information

species Physcomitrella patens
transcript PP1S120_79V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18342689|gb|BJ174724.1|BJ174724
EST:     GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|18342689|gb|BJ174724.1|BJ174724
EST:     GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|18342689|gb|BJ174724.1|BJ174724
EST:     GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCATTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67692817|gb|BJ953050.1|BJ953050
EST:     GCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67692817|gb|BJ953050.1|BJ953050
EST:     GCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67692817|gb|BJ953050.1|BJ953050
EST:     GCCAGGGTTGAGCGAGGCGATCACCC                         A
genomic: GCCAGGGTTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67574192|gb|BJ947016.1|BJ947016
EST:     GAGCGAGGCGATCACC                         GTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCG
genomic: GAGCGAGGCGATCACCgtaagccatt ... caagcagcagGTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCG
EST: gi|67569549|gb|BJ942373.1|BJ942373
EST:     TTGAGCGAGGCGATCACCC                         A
genomic: TTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67569549|gb|BJ942373.1|BJ942373
EST:     TTGAGCGAGGCGATCACCC                         A
genomic: TTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67569549|gb|BJ942373.1|BJ942373
EST:     TTGAGCGAGGCGATCACCC                         A
genomic: TTGAGCGAGGCGATCA-CCgtaagccatt ... caagcagcag-
EST: gi|67697592|gb|BJ957825.1|BJ957825
EST:     TTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCACC                         GTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCG
genomic: TTTTGTCCCTGCCAGGGTTGAGCGAGGCGATCACCgtaagccatt ... caagcagcagGTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgctgccttagtgagacatgtgctgagcacaaatttgtgttggcaagcagcagGTAGCTAGGCGCTTGAGCGTTACAGCAAGCATGTCGACAAATGCGGGGCCGGAAGCCGCGGCCAACAATCCAGGCTATTGTGGCAGTCCTGATGCAGCCA
                              acaaattt  TA-rich tract