1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgaggcaatgtttggtttcataaattggttttctacgttgggatatactggggtttaggctttggcggcgttattgacgggtgatttctgggcgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG
species | Physcomitrella patens |
transcript | PP1S11_173V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162206553|gb|FC382922.1|FC382922
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|18363812|gb|BJ195884.1|BJ195884
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|37821482|gb|BJ579548.1|BJ579548
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|18353016|gb|BJ185071.1|BJ185071
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAEST: gi|67570735|gb|BJ943559.1|BJ943559
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|67694029|gb|BJ954262.1|BJ954262
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162227524|gb|FC403466.1|FC403466
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162209025|gb|FC385577.1|FC385577
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162275286|gb|FC451262.1|FC451262
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162230791|gb|FC406422.1|FC406422
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|37840975|gb|BJ598983.1|BJ598983
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162209026|gb|FC385578.1|FC385578
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|67700234|gb|BJ960467.1|BJ960467
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|18342355|gb|BJ174390.1|BJ174390
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162227523|gb|FC403465.1|FC403465
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|67576701|gb|BJ949525.1|BJ949525
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGEST: gi|162259014|gb|FC435125.1|FC435125
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGG
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|162259015|gb|FC435126.1|FC435126
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAEST: gi|208391789|gb|DC937979.1|DC937979
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
EST: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAG GAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
genomic: AGGTCATTTTCAAGCGAGCGGAGCAGTTCATCAGAGAGTACCGTGGCCAGgtgcgaggca ... cgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCA
ctggggtttaggctttggcggcgttattgacgggtgatttctgggcgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG
tattgac putative branch site (score: 39)
ttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgaggcaatgtttggtttcataaattggttttctacgttgggatatactggggtttaggctttggcggcgttattgacgggtgatttctgggcgttgaacagGAGGCCGACTTCATTAGGCTGAAGAAAGAACTTAAGGTGAAGAGCAGATCAAACGTTTTGCCCGAGGGCAAGCTGATGTTTATTATTCGTATTCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT