1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaatcggcatgtgttgctgcaactagcaagttttttgatcatttcgaccctatgattattggccttgcttttgttgacatgttctgtggacgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTTTCCACATTGCTTACCCTAGCGCCCCTGATCTTCTTCGAGCTGAGTTGC
species | Physcomitrella patens |
transcript | PP1S117_137V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAG AGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTEST: gi|208361659|gb|DC942874.1|DC942874
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAG AGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTEST: gi|100429585|gb|BY959636.1|BY959636
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCGGCTGGTTAAG AGACTCGGTGCTGGAGGATGGGTCACTGCAAGAAGTT-CAGCCTGCGGTCTEST: gi|162198995|gb|FC374543.1|FC374543
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGA-GTTTCAGCCTGCGGTCT
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAG AGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTEST: gi|208399566|gb|DC908747.1|DC908747
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAG AGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTEST: gi|100352789|gb|BY945449.1|BY945449
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
EST: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAG AGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
genomic: CGCAAATGAAGGAGCGCGATGTCGTGGAATGGTTCATTCCGCTGGTTAAGgtctgcgtcg ... acgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTT
cgaccctatgattattggccttgcttttgttgacatgttctgtggacgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTTTCCACATTGCTTACCCTAGCGCCCCTGATCTTCTTCGAGCTGAGTTGC
tgttgac putative branch site (score: 3)
tatgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcggcatgtgttgctgcaactagcaagttttttgatcatttcgaccctatgattattggccttgcttttgttgacatgttctgtggacgataacagAGACTCGGTGCTGGAGAATGGTTCACTGCAAGAGTTTCAGCCTGCGGTCTTTTCCACATTGCTTACCCTAGCGCCCCTGATCTTCTTCGAGCTGAGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - -tgctgca