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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgatgatgtgttcaaagcgttttgttttatcaagatccacgggcaatggatagatctttgtgagctcattgtttgttttgtttgttctgttctctcagGTGTTTGAGCCCCAGTGGTTTTAACCATTATCTTGGTGTTCGGTGTGCTTAAACTCTCTGCTGTCGACACGGAGTTTTGTGGTTTTACTTCTCGGAGTGT

Basic information

species Physcomitrella patens
transcript PP1S114_48V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397995|gb|BY954036.1|BY954036
EST:     CATCGCGGGTTTTGACTGTGTGTTGGAAGTGTATTGAGTTTGGACCACAG                         GTGTTTGAGCCCCAGTGGTTTTAACCATTATCTTGGTGTTCGGTGTGCTTA
genomic: CATCGCGGGTTTTGACTGTGTGTTGGAAGTGTATTGAGTTTGGACCACAGgtgggttttc ... gttctctcagGTGTTTGAGCCCCAGTGGTTTTAACCATTATCTTGGTGTTCGGTGTGCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatggatagatctttgtgagctcattgtttgttttgtttgttctgttctctcagGTGTTTGAGCCCCAGTGGTTTTAACCATTATCTTGGTGTTCGGTGTGCTTAAACTCTCTGCTGTCGACACGGAGTTTTGTGGTTTTACTTCTCGGAGTGT
                                ttttgtttgttctgtt  CT-rich tract
                            tttgtttt  TA-rich tract