Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtatgcaacatcggctcgtctatggattagagaatcctacctgttcgagaccgaggtctacaggtaatgtagcttacgtaatgtttgattttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTGCAGCCCTCTCGTTGCAGGGAAGAGTTTCTCGAGCGCCGCAAGAGCAATG

Basic information

species Physcomitrella patens
transcript PP1S107_181V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851954|gb|BJ609962.1|BJ609962
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67719753|gb|BJ970012.1|BJ970012
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|37842014|gb|BJ600022.1|BJ600022
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18365365|gb|BJ197440.1|BJ197440
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67709612|gb|BJ965428.1|BJ965428
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19780675|gb|BQ039592.1|BQ039592
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162240120|gb|FC418247.1|FC418247
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|37828419|gb|BJ586431.1|BJ586431
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19789290|gb|BQ041217.1|BQ041217
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208348926|gb|DC909835.1|DC909835
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162219960|gb|FC396775.1|FC396775
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208383539|gb|DC923691.1|DC923691
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162205113|gb|FC381211.1|FC381211
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18349467|gb|BJ181516.1|BJ181516
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|37822515|gb|BJ580581.1|BJ580581
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162273402|gb|FC449851.1|FC449851
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67718609|gb|BJ968868.1|BJ968868
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162225599|gb|FC401533.1|FC401533
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18326177|gb|BJ158176.1|BJ158176
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67723688|gb|BJ973947.1|BJ973947
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7067557|gb|AW497412.1|AW497412
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208372034|gb|DC940216.1|DC940216
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67723822|gb|BJ974081.1|BJ974081
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|22133018|gb|BQ827496.1|BQ827496
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18373216|gb|BJ204818.1|BJ204818
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67727319|gb|BJ977578.1|BJ977578
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7583664|gb|AW699571.1|AW699571
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67728018|gb|BJ978277.1|BJ978277
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67719546|gb|BJ969805.1|BJ969805
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|37843738|gb|BJ601746.1|BJ601746
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|15727720|gb|BI740430.1|BI740430
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208385697|gb|DC952858.1|DC952858
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67727040|gb|BJ977299.1|BJ977299
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19788723|gb|BQ040878.1|BQ040878
EST:     TCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67726746|gb|BJ977005.1|BJ977005
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|15727718|gb|BI740429.1|BI740429
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAA                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7046947|gb|AW476841.1|AW476841
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19790351|gb|BQ041826.1|BQ041826
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19785186|gb|BQ040283.1|BQ040283
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162260464|gb|FC436104.1|FC436104
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18371763|gb|BJ203365.1|BJ203365
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCC
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCC
EST: gi|18343313|gb|BJ175351.1|BJ175351
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18364818|gb|BJ196891.1|BJ196891
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18333958|gb|BJ165974.1|BJ165974
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67718980|gb|BJ969239.1|BJ969239
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162239232|gb|FC416501.1|FC416501
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67709747|gb|BJ965563.1|BJ965563
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162227388|gb|FC403122.1|FC403122
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7047001|gb|AW476895.1|AW476895
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19778153|gb|BQ039265.1|BQ039265
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162205112|gb|FC381210.1|FC381210
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162252486|gb|FC427321.1|FC427321
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67727817|gb|BJ978076.1|BJ978076
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19789340|gb|BQ041250.1|BQ041250
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162252576|gb|FC428607.1|FC428607
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162201690|gb|FC378300.1|FC378300
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208349815|gb|DC905939.1|DC905939
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162238906|gb|FC415096.1|FC415096
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|15728106|gb|BI740622.1|BI740622
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|18357746|gb|BJ189805.1|BJ189805
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19778737|gb|BQ039352.1|BQ039352
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19789075|gb|BQ041077.1|BQ041077
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162240166|gb|FC418293.1|FC418293
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|15262266|gb|BI437576.1|BI437576
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGTGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162227389|gb|FC403123.1|FC403123
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|162225598|gb|FC401532.1|FC401532
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7047227|gb|AW477121.1|AW477121
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTGTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|7067130|gb|AW496985.1|AW496985
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|208382675|gb|DC919829.1|DC919829
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|19789320|gb|BQ041237.1|BQ041237
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GGTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
EST: gi|67718258|gb|BJ968517.1|BJ968517
EST:     TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAG                         GTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG
genomic: TCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 121

TGCTGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGACGCACCGGCATCGTCTGGAACGTCACCAAGCGCGCCGTTGGTGTCGTGATGAACAAGCAGgtatggtctc ... ttttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTGCAGCCCTCTCGTTGCAGGGAAGAGTTTCTCGAGCGCCGCAAGAGCAATG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgagaccgaggtctacaggtaatgtagcttacgtaatgtttgattttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTGCAGCCCTCTCGTTGCAGGGAAGAGTTTCTCGAGCGCCGCAAGAGCAATG
                                   taatgtttgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagtatgcaacatcggctcgtctatggattagagaatcctacctgttcgagaccgaggtctacaggtaatgtagcttacgtaatgtttgattttgtacagGTTGGAAACAGGATCATCCAGAAGCGTCTGCACGTTCGAATTGAGCACGTGCAGCCCTCTCGTTGCAGGGAAGAGTTTCTCGAGCGCCGCAAGAGCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA