1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tccctagttagagattaagaatgaaccgagataattacgtggagtgcgaacgggagatgtgattgcacactgaatgttaaagattgttgatttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGCAGAAGCAAAGAGAGGATGCTCTGAACAACAATGGCCGTCCCATCAAGA
species | Physcomitrella patens |
transcript | PP1S102_139V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGEST: gi|162223007|gb|FC399638.1|FC399638
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGEST: gi|18346051|gb|BJ178094.1|BJ178094
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGEST: gi|208381403|gb|DC927839.1|DC927839
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGEST: gi|162275673|gb|FC451662.1|FC451662
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGEST: gi|208353937|gb|DC914091.1|DC914091
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
EST: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAG AAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
genomic: GAGCACCGCTTCCGTCGTCCTTCCGGAAACACGTCTTCTTATTATTACAGgtatgctgtt ... tttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAG
gcgaacgggagatgtgattgcacactgaatgttaaagattgttgatttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGCAGAAGCAAAGAGAGGATGCTCTGAACAACAATGGCCGTCCCATCAAGA
tgttgat putative branch site (score: 16)
tttttcac CT-rich tract
aatgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccctagttagagattaagaatgaaccgagataattacgtggagtgcgaacgggagatgtgattgcacactgaatgttaaagattgttgatttttcacagAAGGGGGAGGAAGCACACGGGCTCATAATGATTAAGCTATTCAGTGTGAAGCAGAAGCAAAGAGAGGATGCTCTGAACAACAATGGCCGTCCCATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcaca