1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atggagcgtcttttttttcagtgctcatgtttcaattgcacatgggatactcatgacttcctgtgcccttttttgacaccttttcaatgttgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG
species | Physcomitrella patens |
transcript | PP1S101_254V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|208374807|gb|DC936430.1|DC936430
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100412621|gb|BY974825.1|BY974825
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100386356|gb|BY988023.1|BY988023
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100435307|gb|BY979177.1|BY979177
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100424461|gb|BY958499.1|BY958499
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100447407|gb|CJ971706.1|CJ971706
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: GTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGEST: gi|100447901|gb|CJ972200.1|CJ972200
genomic: GTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
EST: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAG GCTATGGGAGGGTTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
genomic: TACGTTTTGTTCTTCGTGTCCCTGCTTGCATTGATCTACACCGGTGAAAGgtgctccaat ... tgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAG
gatactcatgacttcctgtgcccttttttgacaccttttcaatgttgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG
ttttgac putative branch site (score: 3)
ttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggagcgtcttttttttcagtgctcatgtttcaattgcacatgggatactcatgacttcctgtgcccttttttgacaccttttcaatgttgagctccagGCTATGGGAGGATTATATAATAAAAGTACAGCTGAGTAGTACTGATCCGAGTATCAGGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA