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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgttttggaagctttgtgcgagagccattgcgtgtaagcatctattgttcagcggttgacgtaggagttgaggttttgattattgactggggaactgtagGTGAAGGAGGTTGATAGCTATGGAGGGCCACTCCCACTCTCACGACCATTCCCACGACCACAGCCATGATTTATCCCATGGCCACTCGCATGATCACTCT

Basic information

species Physcomitrella patens
transcript PP1S101_185V6.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18362760|gb|BJ194831.1|BJ194831
EST:     ACTTGCACAGTTGCAGCTGTGGAGTGATTTGTTTGCAGTTGGCTGGATTG                         GTGAAGGAGGTTGATAGCTATGGAGGGCCACTCCCACTCTCACGACCATTC
genomic: ACTTGCACAGTTGCAGCTGTGGAGTGATTTGTTTGCAGTTGGCTGGATTGgtagtctgcg ... ggaactgtagGTGAAGGAGGTTGATAGCTATGGAGGGCCACTCCCACTCTCACGACCATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcagcggttgacgtaggagttgaggttttgattattgactggggaactgtagGTGAAGGAGGTTGATAGCTATGGAGGGCCACTCCCACTCTCACGACCATTCCCACGACCACAGCCATGATTTATCCCATGGCCACTCGCATGATCACTCT
                                   tattgac  putative branch site (score: 2)
                            ttttgattatt  TA-rich tract