1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgacgatcccgcgtgtggatttgctgcacctgaggttgattcaggtagggctgactgagtgatgaaatggggtggttgttgtcgtgggcgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
species | Physcomitrella patens |
transcript | PP1S101_170V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18374490|gb|BJ206068.1|BJ206068
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18350839|gb|BJ182890.1|BJ182890
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100447629|gb|CJ971928.1|CJ971928
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|67701599|gb|BJ961832.1|BJ961832
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGAEST: gi|208376645|gb|DC932109.1|DC932109
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGA
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18360844|gb|BJ192907.1|BJ192907
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100357299|gb|BY983792.1|BY983792
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18365279|gb|BJ197353.1|BJ197353
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|67712836|gb|BJ966285.1|BJ966285
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18350558|gb|BJ182609.1|BJ182609
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100446549|gb|CJ970848.1|CJ970848
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|208360268|gb|DC943012.1|DC943012
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|67718552|gb|BJ968811.1|BJ968811
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100365424|gb|BY966589.1|BY966589
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100400204|gb|BY990831.1|BY990831
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|100425961|gb|BY977207.1|BY977207
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|208371115|gb|DC931575.1|DC931575
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|67719511|gb|BJ969770.1|BJ969770
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CAGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|208359545|gb|DC934574.1|DC934574
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|18353895|gb|BJ185950.1|BJ185950
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCEST: gi|67718199|gb|BJ968458.1|BJ968458
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCC
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|208377442|gb|DC902771.1|DC902771
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|162154878|gb|FC331920.1|FC331920
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGGEST: gi|208390264|gb|DC942015.1|DC942015
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
EST: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCG AGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
genomic: CTGCGTCCAAGACTCTGCGTCAGGTGGCCGCGCATGCCACGGCTGTTGCGgtgagtctcc ... cgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
ggtagggctgactgagtgatgaaatggggtggttgttgtcgtgggcgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
ggctgac putative branch site (score: 3)
atgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgacgatcccgcgtgtggatttgctgcacctgaggttgattcaggtagggctgactgagtgatgaaatggggtggttgttgtcgtgggcgtggtgcagAGTAAGGAGGCTGTGTCATCGTCGTCGTCGAGCCAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - -tgctgca