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...tcactgaaagtccagttctagtcgaacttttcgtgagggtttcgttccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
species | Physcomitrella patens |
transcript | PP1S101_168V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGGGGACAGCGAATTCGCACCGAATGGCTGTGCAAAAGACGATGCG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATEST: gi|18347661|gb|BJ179708.1|BJ179708
genomic: GCTCAGGGGACAGCGAATTCGCACCGAATGGCTGTGCAAAAGACGATGCGgttgttacaa ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
EST: GCTCAGGGGACAGCGAATTCGCACCGAATGGCTGTGCAAAAGACGATGCG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
genomic: GCTCAGGGGACAGCGAATTCGCACCGAATGGCTGTGCAAAAGACGATGCGgttgttacaa ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
tccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
ttcctcattttgttt CT-rich tract
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgaaagtccagttctagtcgaacttttcgtgagggtttcgttccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT