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...tcactgaaagtccagttctagtcgaacttttcgtgagggtttcgttccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
species | Physcomitrella patens |
transcript | PP1S101_168V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATEST: gi|208366869|gb|DC940183.1|DC940183
genomic: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTGgtgatgaaac ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
EST: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATEST: gi|100447917|gb|CJ972216.1|CJ972216
genomic: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTGgtgatgaaac ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
EST: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATEST: gi|18348510|gb|BJ180559.1|BJ180559
genomic: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTGgtgatgaaac ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
EST: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTG ATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
genomic: TGGCTTGTTTTCTCGTGGTTTCCGCGTGCTCGCTGGGTGGAGATGAATTGgtgatgaaac ... tgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAAT
tccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
ttcctcattttgttt CT-rich tract
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgaaagtccagttctagtcgaacttttcgtgagggtttcgttccattttcgtatagccactgtgatgaagagttcctcattttgtttgcattgcagATTTGTACAGTTGAGAGCCAAGGCTTGGAATGTAGTTCTCAGCAGACGAATAAGCTGCTCATACAGGGAGGCATTGTGGTCAATGCGGACTTTCAACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT