1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatattgttatgctgtactctcagaggtttcttaatccttgcatgtgacttcgagcagttgtctcaataggcgaggggtttacggatttgatatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGGTTTGGCAGTGCACTTTGCCTGGAAAAGTTGGG
species | Physcomitrella patens |
transcript | PP1S101_152V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|19789833|gb|BQ041539.1|BQ041539
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|208359068|gb|DC957816.1|DC957816
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|162271913|gb|FC448123.1|FC448123
genomic: GGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGATCTCTAAATTTGATGEST: gi|162212826|gb|FC388626.1|FC388626
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|67570281|gb|BJ943105.1|BJ943105
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|67574918|gb|BJ947742.1|BJ947742
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|162203152|gb|FC379249.1|FC379249
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCAT GGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGEST: gi|208361067|gb|DC957532.1|DC957532
genomic: GCGGTCGTCTTGCGGAGGAGCGCAAGGCCTGGCGCAAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
EST: AAGAATCATCCTCAT GGA-TTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAANTTGATG
genomic: AAGAATCATCCTCATgtaaaccgat ... atatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATG
tgacttcgagcagttgtctcaataggcgaggggtttacggatttgatatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGGTTTGGCAGTGCACTTTGCCTGGAAAAGTTGGG
atttgat putative branch site (score: 20)
atttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattgttatgctgtactctcagaggtttcttaatccttgcatgtgacttcgagcagttgtctcaataggcgaggggtttacggatttgatatgggcagGGATTTGTAGCGAGGCCGGAGACAGGTGCAGATGGAGCTCTAAATTTGATGGTTTGGCAGTGCACTTTGCCTGGAAAAGTTGGG
- - - - - tgctgta