1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaattgtggcggaattggttgcattagactgccactgttgttacttggaatttcagggaattcggttctcaggcatgtggatgttttctgtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACGTGGAGTGAGGGCATGAATTCTGTTCCTTGGCTGGGTTCGCAATTTTGC
species | Physcomitrella patens |
transcript | PP1S101_102V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|18343308|gb|BJ175346.1|BJ175346
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: GTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|100410555|gb|BY992159.1|BY992159
genomic: GTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTCAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|208362017|gb|DC943472.1|DC943472
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|18330261|gb|BJ162267.1|BJ162267
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|100412788|gb|BY992436.1|BY992436
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTCAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACEST: gi|208357531|gb|DC934053.1|DC934053
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
EST: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAG AGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
genomic: ATGGCACAGTTGCCGCACTCTCTCTGTGTGTTTAGTGCAGTGGGGTGCAGgtgagttttc ... gtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGAC
ttggaatttcagggaattcggttctcaggcatgtggatgttttctgtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACGTGGAGTGAGGGCATGAATTCTGTTCCTTGGCTGGGTTCGCAATTTTGC
tgttttctgttttt CT-rich tract
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattgtggcggaattggttgcattagactgccactgttgttacttggaatttcagggaattcggttctcaggcatgtggatgttttctgtttttgcagAGCTCATGTTTTGTTCGTTGAGGGGAGCTCTTGACGTTGAAGGTCTCGGACGTGGAGTGAGGGCATGAATTCTGTTCCTTGGCTGGGTTCGCAATTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG