1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcagactcctcctttattttatttagctttttaggatcaagtgtattacaagatagacacccttatgtcgaaacttgaataaacttgggtacttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAATCTCGAGATGACAAGAGGGGAATCGTGATAACGGGGGGGTCAAAGGGAC
species | Physcomitrella patens |
transcript | PP1S100_87V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|162165461|gb|FC340572.1|FC340572
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|67508113|gb|BJ940984.1|BJ940984
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|208354101|gb|DC902399.1|DC902399
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|162177445|gb|FC353706.1|FC353706
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|100393457|gb|BY953408.1|BY953408
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|208376855|gb|DC906824.1|DC906824
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|162193968|gb|FC371781.1|FC371781
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAAEST: gi|208353205|gb|DC910172.1|DC910172
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
EST: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAG GTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
genomic: GGCAACAAAATTGGTGCCGTTACAACTGCACGCCCATCCTCACTGCGAAGgttatcccaa ... acttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAA
ttacaagatagacacccttatgtcgaaacttgaataaacttgggtacttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAATCTCGAGATGACAAGAGGGGAATCGTGATAACGGGGGGGTCAAAGGGAC
ttgaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagactcctcctttattttatttagctttttaggatcaagtgtattacaagatagacacccttatgtcgaaacttgaataaacttgggtacttgtgtagGTTAGGGTAAGGCGATGTGGAGCATACACCAGGAGTTCAGTGACGGCCCAATCTCGAGATGACAAGAGGGGAATCGTGATAACGGGGGGGTCAAAGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG