1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acttctttatggatgattgtcttatcttatttatgtattttcaattcaataatatccgccctgtgataagtgcattaatgttcactgtgtatatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGTCGTTGAATTATTCACGTCTCATATCTACCTATTCAGTGTTCGTGAAGGA
species | Physcomitrella patens |
transcript | PP1S100_63V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTG GATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGTEST: gi|100367009|gb|BY948322.1|BY948322
genomic: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTGgtatttcctg ... atatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
EST: GGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTTCAC-TGCATTG GATCACTAATTGTAATATTTGGGTTTCTTCCCATCGGAGCAAGCACCCATGEST: gi|208389803|gb|DC937438.1|DC937438
genomic: GGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTT-CACCTGCATTGgtatttcctg ... atatgcgcagGATCACTAATTGTAATATTTGG-TTTCTTCCAATCGGAGCAAGCACCAATG
EST: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTG GATCACTAATTGTAATAGTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
genomic: AGGATGTGGAAAACCGTGTTCCATATTTGTTCCCTTCTTCACCTGCATTGgtatttcctg ... atatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGT
tcaataatatccgccctgtgataagtgcattaatgttcactgtgtatatgcgcagGATCACTAATTGTAATATTTGGTTTCTTCCAATCGGAGCAAGCACCAATGTCGTTGAATTATTCACGTCTCATATCTACCTATTCAGTGTTCGTGAAGGA
cattaat putative branch site (score: 3)
attaatgtt TA-rich tract