Sequence
atgc intronic sequence ATGC exonic sequence...aaaaacctaacattcctattgagtgagtcaactgaacattttttctcaaattttgtcattgcggattttcattaaattgccgtccctttcttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCGGGAGCAAGCCGAAGGAGTTTCTCAAAGTGCCCCAATTGCAAACAATTCC
Basic information
species | Physcomitrella patens |
transcript | PP1S100_55V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18344541|gb|BJ176582.1|BJ176582EST: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAG GTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
genomic: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAGgtagtcgcac ... ttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
EST:
gi|162267977|gb|FC444058.1|FC444058EST: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAG GTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
genomic: CTTTGTCGAAACGCGGATCTGATTAGGGTTTGCGGGTTTGTGCGGGGGAGgtagtcgcac ... ttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaattttgtcattgcggattttcattaaattgccgtccctttcttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCGGGAGCAAGCCGAAGGAGTTTCTCAAAGTGCCCCAATTGCAAACAATTCC
ttgccgtccctttctt CT-rich tract
attttcattaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaacctaacattcctattgagtgagtcaactgaacattttttctcaaattttgtcattgcggattttcattaaattgccgtccctttcttttgtacagGTTTGTAATGGAAGACCCTGAGGCACGGCGAGCGAGGCTGAAGGCCATGCGGGAGCAAGCCGAAGGAGTTTCTCAAAGTGCCCCAATTGCAAACAATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG