1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgccaccgagcccctcatcttccaagttacgctagctctatgtgctgttcattatctcctctccttgttcgatgatcacatgtactttgggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCTGACGATGAAACAGGCCGTTCTG
species | Physcomitrella patens |
transcript | PP1S100_198V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCEST: gi|18327597|gb|BJ159600.1|BJ159600
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCEST: gi|18326585|gb|BJ158584.1|BJ158584
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCEST: gi|18367270|gb|BJ199352.1|BJ199352
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
EST: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATG GAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGNGGGAAGCAAGACCC
genomic: GTTCGTGGTCATTGGTGCGTTTGCGGCCTTCGGGTTCGGCTGGGGAAATGgtaagttcac ... gggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCC
gctgttcattatctcctctccttgttcgatgatcacatgtactttgggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCTGACGATGAAACAGGCCGTTCTG
tcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgccaccgagcccctcatcttccaagttacgctagctctatgtgctgttcattatctcctctccttgttcgatgatcacatgtactttgggtgtgcagGAGCGAATGACTTGGCAAATGGGTTCGCTACCTCGGTGGGAAGCAAGACCCTGACGATGAAACAGGCCGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgt