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...gaatggtcgatgaaggaatttattgcgagcgatcatgttagttaagagtctagagcgtttttttgacctagtgtgatactctgtaattttctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGTAGCAATTTCTGGGAATTATGCTTGAAGATGGTGTTCAAGTGGCCGACT
species | Physcomitrella patens |
transcript | PP1S100_112V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAG GAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGEST: gi|67716554|gb|BJ966814.1|BJ966814
genomic: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAGgtaaatctgt ... ctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTG
EST: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAG GAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGEST: gi|162274327|gb|FC450295.1|FC450295
genomic: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAGgtaaatctgt ... ctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTG
EST: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAG GAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGEST: gi|18355492|gb|BJ187551.1|BJ187551
genomic: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAGgtaaatctgt ... ctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTG
EST: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAG GAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTG
genomic: AAATTGAGAAATCAGAGTCCGTGGTGTGATTGTGGTCTTCGAGGAAGAAGgtaaatctgt ... ctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTG
gagtctagagcgtttttttgacctagtgtgatactctgtaattttctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGTAGCAATTTCTGGGAATTATGCTTGAAGATGGTGTTCAAGTGGCCGACT
ttttgac putative branch site (score: 3)
ttttctgt putative PPT
tttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatggtcgatgaaggaatttattgcgagcgatcatgttagttaagagtctagagcgtttttttgacctagtgtgatactctgtaattttctgtgtacagGAAGCGTTCGATGCGTACGCTGGGAATATTGCATTGAACTACGGGAAAGTGTAGCAATTTCTGGGAATTATGCTTGAAGATGGTGTTCAAGTGGCCGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG